PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0064s0019.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 378aa    MW: 42361.2 Da    PI: 8.5589
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0064s0019.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.62.2e-08833127
                          --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                          ykt+ C+ +++ G+C++  +C+FaHg+
  Sphfalx0064s0019.1.p  8 YKTKMCSLYMQRGYCPR-QSCSFAHGE 33
                          9****************.*******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-13640IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.69E-7638IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103734IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031733IPR000571Zinc finger, CCCH-type
PfamPF006423.5E-5833IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAYARDLYKT KMCSLYMQRG YCPRQSCSFA HGESELRKVP GRFDNGGDLR NAVDHRHSPS  60
YWRRSPGRDE RGRDWHENGS PHHDRGHTQS KSPAKRRRSV SCSPQKSPEY KKRDTKKHPD  120
TTEPHLSDVS GPIDGAEDVA VDEANGKAGS QSISTSSQEA LEEQLQEVSS FNKTLLAQKV  180
KLEHSLEKKV LETTELSDKI VMLETKLDSI KDTCKGLASR TKKFVKVYKG FFRAQEELKR  240
SQAKLMRLVD DISEDNGPML DTDVEYLDIN TTSYEDPLCE IPTNNQANHR PTAAGSHLQR  300
QENDTETGNR LSSSIEEPLL TESKQHKPTA AQQERRRALV QKALKQGSLS LKTGDGRDGI  360
ATDHKMSSVV SLNGELK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21810.16e-26C3H family protein